Mr. Newman’s irascible temper was kindled into a persecuting zeal against the offending brethren, and, after excommunicating them, he aroused the civil authorities against them. So successful was he that four petitions were presented to the Plymouth Court; one from Rehoboth, signed by thirty-five persons; one from Taunton; one from all the clergymen in the colony but two, and one from the government of Massachusetts. How will the authorities at Plymouth treat this first division in the ruling church of the colony? Will they punish by severe fines, by imprisonment, by scourgings, or by banishment? By neither, for a milder spirit of toleration prevailed, and the separatists were simply directed to “refrain from practices disagreeable to their brethren, and to appear before the Court.”
In 1651, some time after his trial at Plymouth, Mr. Holmes was arrested, with Mr. Clarke, of Newport, and Mr. Crandall, for preaching and worshiping God with some of their brethren at Lynn. They were condemned by the Court at Boston to suffer fines or whippings. Holmes refused to pay the fine, and would not allow his friends to pay it for him, saying that “to pay it would be acknowledging himself to have done wrong, whereas his conscience testified that he had done right.” He was accordingly punished with thirty lashes from a three-corded whip, with such severity, says Governor Jenks, “that in many days, if not some weeks, he could take no rest but as he lay upon his knees and elbows, not being able to suffer any part of his body to touch the bed whereon he lay.” Soon after this, Holmes and his followers moved to Newport, and on the death of the Reverend Mr. Clarke, in 1652, he succeeded him as pastor of the First Baptist Church in that time. Mr. Holmes died at Newport in 1682, aged seventy-six years.