Meanwhile, all wishes on his part to continue his discoveries were futile, while he was engaged in the almost hopeless duty of reconciling various adventurers and conciliating people who had no interests but their own.  In Spain, his enemies were doing everything in their power to undermine his reputation.  His statements were read more and more coldly, and at last, on the twenty-first and twenty-sixth of May, 1499, letters were written to him instructing him to deliver into the hands of Bobadilla, a new commandant, all the fortresses any ships, houses and other royal property which he held, and to give faith and obedience to any instructions given by Bobadilla.  That is to say, Bobadilla was sent out as a commander who was to take precedence of every one on the spot.  He was an officer of the royal household, probably a favorite at court, and was selected for the difficult task of reconciling all difficulties, and bringing the new colony into loyal allegiance to the crown.  He sailed for San Domingo in the middle of July, 1500, and arrived on the twenty-third of August.

On his arrival, he found that Columbus and his brother Bartholomew were both absent from the city, being in fact engaged in efforts to set what may be called the provinces in order.  The young Diego Columbus was commander in their absence.  The morning after he arrived, Bobadilla attended mass, and then, with the people assembled around the door of the church, he directed that his commission should be read.  He was to investigate the rebellion, he was to seize the persons of delinquents and punish them with rigor, and he was to command the Admiral to assist him in these duties.

He then bade Diego surrender to him certain prisoners, and ordered that their accusers should appear before him.  To this Diego replied that his brother held superior powers to any which Bobadilla could possess; he asked for a copy of the commission, which was declined, until Columbus himself should arrive.  Bobadilla then took the oath of office, and produced, for the first time, the order which has been described above, ordering Columbus to deliver up all the royal property.  He won the popular favor by reading an order which directed him to pay all arrears of wages due to all persons in the royal service.

But when he came before the fortress, he found that the commander declined to surrender it.  He said he held the fortress for the king by the command of the Admiral, and would not deliver it until he should arrive.  Bobadilla, however, “assailed the portal;” that is to say, he broke open the gate.  No one offered any opposition, and the commander and his first-lieutenant were taken prisoners.  He went farther, taking up his residence in Columbus’s house, and seizing his papers.  So soon as Columbus received account of Bobadilla’s arrival, he wrote to him in careful terms, welcoming him to the island.  He cautioned him against precipitate measures, told him that he himself was on the point of going to Spain, and that he would soon leave him in command, with everything explained.  Bobadilla gave no answer to these letters; and when Columbus received from the sovereigns the letter of the twenty-sixth of May, he made no longer any hesitation, but reported in person at the city of San Domingo.